MIT-LCP's Repositories

Materials for 2019 HST953 Course.

⭐ 6 🌐 Public

2019_aarhus_critical_data

Tutorials for the 2019 Aarhus Datathon

⭐ 9 🌐 Public

2019_hack_aotearoa_eicu

eICU workshop presented at Hack Aotearoa

⭐ 1 🌐 Public

2019_mlhc_workshop

Resources for our Workshop at the 2019 Machine Learning in Healthcare Conference

⭐ 4 🌐 Public

2019_tokyo_datathon

Materials for the Tokyo datathon (March 2019)

⭐ 8 🌐 Public

2019_toronto_health_hack

2019 Toronto Datathon https://www.tdothealthhack.com

⭐ 11 🌐 Public

2022-ieee-embc-workshop

Workshop for the 2022 IEEE EMBC Conference

⭐ 0 🌐 Public

Materials for the eICU Collaborative Research Database tutorial at ACM-BCB 2017

⭐ 3 🌐 Public

Repository for Aline project with Doug and Leo

⭐ 4 🌐 Public

aline-mimic-iii

⭐ 5 🌐 Public

ARCHIVED-wfdb-plus

The Waveform Database Software Package

⭐ 1 🌐 Public

aws-physionet-open-data

Script for generating the PhysioNet pages in the AWS Open Data Registry

⭐ 1 🌐 Public

better-science-ideathon

Website for https://betterscience.mit.edu

⭐ 3 🌐 Public

bhi-bsn-challenge

Repository for the IEEE BHI-BSN MIMIC-III Challenge

⭐ 10 🌐 Public

Materials for the BIDMC datathon (Sat 29 Feb 2020)

⭐ 13 🌐 Public

A python package for removing duplicate text in clinical notes or other documents

⭐ 39 🌐 Public

citation-tracker

Tools for tracking citations to MIMIC, PhysioNet etc.

⭐ 5 🌐 Public

clinical-study-template

A template repo for clinical studies

⭐ 4 🌐 Public

Analysis of high resolution clinical data for COVID-19 patients

⭐ 19 🌐 Public

Website for critical-data

⭐ 8 🌐 Public

critical-data-book

Code repository for the critical data book

⭐ 76 🌐 Public

CVSim: a cardiovascular simulator.

⭐ 7 🌐 Public

A Python package that facilities the conversion of clinical terminology between two different coding systems for interoperability.

⭐ 1 🌐 Public

datathon-gossis

Resources for the GOSSIS datathon in Pittsburgh

⭐ 1 🌐 Public

datathon-package

Pip installable package containing helper functions for datathons

⭐ 5 🌐 Public

django-static-mathjax

MathJax package for Django

⭐ 0 🌐 Public

Tools for unpacking and converting data from the DWC system

⭐ 1 🌐 Public

Automatically exported from code.google.com/p/ds-review

⭐ 3 🌐 Public

Code related to extracting structured data from echocardiography reports

⭐ 1 🌐 Public

⭐ 3 🌐 Public

Code and website related to the eICU Collaborative Research Database

⭐ 368 🌐 Public

eicu-data-paper

Data descriptor of the eICU Collaborative Research Database for submission to Scientific Data

⭐ 9 🌐 Public

Repository moved

⭐ 3 🌐 Public

false-alarm-reduction

Code for building a model to reduce false alarms in the intensive care unit

⭐ 2 🌐 Public

Identify predictive parameters for 28-day mortality using a genetic algorithm (GA) and Gaussian mixture models (GMM)

⭐ 4 🌐 Public

gcp-physionet-data

⭐ 0 🌐 Public

Extracting consistent concepts from multiple databases

⭐ 12 🌐 Public

Sample code for Hack Aotearoa 2023

⭐ 10 🌐 Public

LCP project investigating hyperdynamic ejection fraction in critically ill patients

⭐ 5 🌐 Public

license-and-dua

The PhysioNet Data Use Agreement and License

⭐ 8 🌐 Public

Collaborative labelling of events in physiological waveforms

⭐ 0 🌐 Public

mimic-and-eicu-talk

Overview of MIMIC-III and the eICU Collaborative Research Database

⭐ 4 🌐 Public

Study on discharge delays in the MICU using the MIMIC-III database

⭐ 3 🌐 Public

MIMIC Code Repository: Code shared by the research community for the MIMIC family of databases

⭐ 3079 🌐 Public

mimic-code-paper

Paper describing the MIMIC Code Repository

⭐ 0 🌐 Public

Cookbook of sql scripts for MIMIC-II

⭐ 17 🌐 Public

Code, documentation, and discussion around the MIMIC-CXR database

⭐ 290 🌐 Public 📦 Archived

Structured data from echocardiogram reports

⭐ 0 🌐 Public

mimic-iii-paper

Repository for the paper describing MIMIC-III

⭐ 84 🌐 Public

Deprecated. For the latest MIMIC-IV code, please refer to: https://github.com/MIT-LCP/mimic-code

⭐ 291 🌐 Public 📦 Archived

mimic-iv-datathon

⭐ 1 🌐 Public

mimic-iv-demo-omop

MIMIC (Medical Information Mart for Intensive Care) is a large, single-center database comprising information relating to patients admitted to critical care units at a large tertiary care hospital. This repository contains the ETL to the OMOP CDM.

⭐ 2 🌐 Public

mimic-iv-ecg-ve

Vector Embedding Pipeline for MIMIC-IV-ECG

⭐ 1 🌐 Public

mimic-iv-website

Website for MIMIC-IV

⭐ 19 🌐 Public

Mapping the MIMIC-III database to the OMOP schema

⭐ 143 🌐 Public

Theme for MIMIC websites

⭐ 0 🌐 Public

Website for the MIMIC Critical Care Database (currently version MIMIC-III)

⭐ 122 🌐 Public

Introduction to MIMIC-III, the Critical Care Database

⭐ 86 🌐 Public

mit-lcp.github.io

Website for the LCP Laboratory https://lcp.mit.edu

⭐ 2 🌐 Public

mitre_deid_toolkit

Not the official distribution of the MITRE deidentification toolkit.

⭐ 3 🌐 Public

moody-ch.github.io

PhysioNet/Computing in Cardiology Challenges

⭐ 1 🌐 Public

northstar_mimic_visualization

Code to extract MIMIC data for the Northstar interactive visualization tool

⭐ 2 🌐 Public

OLD-mit-lcp.github.io

⭐ 2 🌐 Public

open-science-fair-2017

Repository for the Open Science Fair 2017 workshop

⭐ 2 🌐 Public

oracle2postgres

Migrate data from an Oracle database to a Postgres database

⭐ 31 🌐 Public

patienttracking

MIMIC II Patient Tracking

⭐ 3 🌐 Public

philips-eicu-meeting-2019

Content for the 2019 eICU/eRI Collaborative Research Workshop (23rd September 2019, Colorado)

⭐ 5 🌐 Public

A collection of tools for working with the PhysioNet repository.

⭐ 74 🌐 Public

physionet-build

The new PhysioNet platform.

⭐ 71 🌐 Public

physionet-config

Configuration data for PhysioNet

⭐ 0 🌐 Public

PhysioNetChallengePublic

Public Software for the PhysioNet/CinC Challenge Series

⭐ 7 🌐 Public

Read and write FLAC audio files in Python

⭐ 2 🌐 Public

Presentations by LCP members

⭐ 1 🌐 Public

QueryBuilder-AWS

QueryBuilder configured to run on the AWS-EC2 instances.

⭐ 1 🌐 Public

querybuilder-issue

Public Issue tracker for the Query Builder repo

⭐ 2 🌐 Public

Resources for the Society of Critical Care Medicine (SCCM) Datathon

⭐ 23 🌐 Public

Scrub/blur faces in a dataset of images.

⭐ 0 🌐 Public

Shakespeare-Method

The Shakespeare-Method repository contains the code we used to develop a new method to identify attributed and unattributed potential adverse events using the unstructured notes portion of electronic health records.

⭐ 7 🌐 Public

the-bias-glossary

⭐ 1 🌐 Public

vancomycin-nephrotoxicity

Study in eICU-CRD about vancomycin and associated nephrotoxicity

⭐ 10 🌐 Public

vector-embedding

Vector Embedding Projects

⭐ 2 🌐 Public

waveform-annotation

Platform for annotating physiological waveform data.

⭐ 18 🌐 Public

Native Python WFDB package

⭐ 815 🌐 Public